Welcome to msea’s documentation!

Microbe-Set Enrichment Analysis (MSEA) for functional interpretation of sets of microbial organisms

What is it?

msea is a Python package implementing the Microbe-Set Enrichment Analysis pipeline, helping microbiologists make sense of collections microbes via external annotations.

Table of Contents

• Quick start
  • Installation
  • Dependencies
  • Development
• Tutorials for msea
  • Tutorial 1: Basic walk-through
  • Tutorial 2: Uses MSEA as part of a microbiomic data processing pipeline
• API documentations
  • SetLibrary
  • Utility functions
• LICENSE

Indices and tables

• Index
• Module Index
• Search Page